SE0630063

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11041
  • Thellungiella halophila
  • SE0630063
  • hAT
  • Hat3
  • scaffold_3:5186901-5187183
  • CTTAGAGG
  • CTTAGAGGCAGAGCCGTGCCTGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
    AG                   CACA    AA   -   ATGTGCTTCAGGGCCGGAGGTCTTAAATATTTTTTTTGGGCCAATTTTCTAAAATTTGAATAAGTGAAAGCACGTTTGGTTAGAGGTTTGCCTGGGTTCGACT
 CTT  AGGCAGAGCCGTGCCTGAG    GGCT  TGA AGC                                                                                                       
 |||  |||||||||||||||||||    ||||  ||| |||                                                                                                       C
 GAG  TTCGTCTCGGCACGGACTC    AAAG  AGA TGA                                                                                                       
A   -A                   ---T    --   T   TGTTCGCTCTTTTTTTTTAACCGGGGATTTTGAAAAGAATTACATCTAATTGGGTGTTTATTAACCGTTTTTTTTCTTTTTTACTATCTATACACGAACCCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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