SE0650064

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11042
  • Thellungiella halophila
  • SE0650064
  • PIF/harbinger
  • To14
  • scaffold_13:5783520-5783984
  • TAA
  • AGGGGGTGTTATTGGAGAGTTGATTTATAAAGATTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TA      T        A     -       A        --T      TAAGCTTCTATAGTTATTGGTTTGTGGATTTTTACATTCTTAATAGATTCCTCTGTTATTCATTTAGAGATTATAAAAATCAGTTGTTATTGATATGATGATTTTTATAATCTAATAAAAATCCATTGTTATTCAAAAAGTCTGCATTTTAATGATTCTATGATTCTGTTATAATCTAGTGTTATT
  AGGGGG GTTATTGG GAGTT GATTTAT AAGATTTT   AGAGTT                                                                                                                                                                                          
  |||||| |||||||| ||||| ||||||| ||||||||   ||||||                                                                                                                                                                                           
  TCCCCC CAATAACC CTTAA CTAAATA TTCTAAAA   ACTAAA                                                                                                                                                                                          
AA      -        -     T       C        TCA      ATTTTTAGTACTCTAAACAGTTTAAAAATTATCAAAACAACCTAAATATTTTAAATCTCTCTCAAGATACCTAAATTTGTTAGATAATTATTAAAAAATTATACTGTCTAAAACTCTTAGATTCCTTATATCCATCATAAAACTCTTAGTACTAAATACTTAATTTAATATTTCTTAGTAATACGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End