SE0630068

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11046
  • Thellungiella halophila
  • SE0630068
  • hAT
  • Hat22
  • scaffold_11:4939878-4940501
  • TCCTTAGG
  • CCTTAGGCAGAGCCGTGCTC

Secondary structure and sequence

TSD    TIR
5'



3'
T   T   -   A      C  ACCTT T    AAA    C    -   TTAGGCCACCATGATATATCTAAATTTTGTGGTATGAATTTTAAATTTTAATTAGAAATAAGTTATTGTGTATGTGTAAATAGTATCTCTTTTATTAGTTTTTCATTGATGATTTCTATAAACATAGTGAAGTTAGGCTTAAATCGTTCTATGTTTAGTCATTATTAGTTTTCACATATAAAATTTACTTTACTTGTCCAAAGTTGATTTTCTTTTTATTATGTTTTCTATTACTGTTTTTTTTCTTCTCGTACATTATTTTTCATAT
 CCT AGG CAG GCCGTG TC     G GTTT   AAGG GGCT GCC                                                                                                                                                                                                                                                                            
 ||| ||| ||| |||||| ||     | ||||   |||| |||| |||                                                                                                                                                                                                                                                                            A
 GGA TCC GTC CGGCAC AG     C CAAA   TTCC CCGA TTC                                                                                                                                                                                                                                                                            
    T   T   A      -  ---AT -    --C    -    A   CGCTTTAAATTTTTACACCGGAGATATGTTTTTTTACAATTATTTTTTGTACTTTGTGGATCATTTTATGTAGGTTATAATATTTTTACGATGTAAGTTATAAAAGTCAGATCTCTGTTTGATATGTCAAATGATATAGTTTATTTTAAAGTTATAATTTTCTATAATAATGTTCTCATACATTTACACAATAAATATTGTAGACACAACTAGTTTAACATAAAAAAATTTTTGCTTTTTATATTTTATTTCACTTAATATACTTAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End