SE0630077

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11055
  • Thellungiella halophila
  • SE0630077
  • hAT
  • Hat25
  • scaffold_3:501666-501841
  • TGTGGATG
  • ATGCAGGGCCGGATTTGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TGTGG         C         CCAAACCCA     ACATTTGTTTCAAGCCCCCAAATTTTTTTGTCTAATTTAGCTTATAAATTTGTT
     ATGCAGGGC GGATTTGGG         TTGAA                                                      
     ||||||||| |||||||||         |||||                                                       
     TGTGTCCTG CCTAGACTC         AAAAC                                                      
GTAGG         A         --------T     TCCCGAACTTTGTTTTTTGTTTTTACTCCCGGATTAACCAAAATATTTAAAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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