SE0650078

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11056
  • Thellungiella halophila
  • SE0650078
  • PIF/harbinger
  • To14
  • scaffold_2:19770217-19770675
  • TTA
  • GGGGGTTATTGGGAGTTAGATTTATGAAGATTTTAGTTGATTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAGG    -        -     A                ---    ---       ------AAAATTAT        --------   AATTT   AGAGTTTTGTTGGATTTGTAAAATTTAGAGAGAGTTCTATGGATTTAAACAATCTATTAAGAAATTTTTAATATGACAGATTTTGAAAATCCAAGGGATATAGGTAGTATTTTGAGAATTATGAATTAAATTATAAAGAATCAT
     GGGG GTTATTGG GAGTT GATTTATGAAGATTTT   AGTT   GATTTTA              GAGATTTG        TCA     TTA                                                                                                                                                
     |||| |||||||| ||||| ||||||||||||||||   ||||   |||||||              ||||||||        |||     |||                                                                                                                                                T
     CCCC CAATAACC CTCAA CTAAATATTTCTAAAA   TCAA   CTAAGAT              ACCTAAAA        ATT     TCT                                                                                                                                                
 ATTA    A        T     -                ATC    ATT       ATCAATAATCAAAC        ATGTAAGA   ----A   AAGGAGACAATAAGTAAATCTCTAATATTTTTAATTAACAATAACTATACTACTAAAAATATTAGATTAGTTTTAGGTAACAATAAGTTTTTCAGACGTAAAAGTACTAAGATACTAAGACAATATTAGATCACAATAACCGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3