SE0630079

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11057
  • Thellungiella halophila
  • SE0630079
  • hAT
  • Hat26
  • scaffold_15:6821121-6821695
  • GTTCCCGA
  • TAGGCCTGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTCCCGA           ACATTA  C   CCC      ---  TATCCGAACCCGACCCGAAAAAGAGAAATCGAACCCGAATCGAAACTGTTAAAATATCCGAACGGTTTTTAAATTTCTAAATCCGAAAAACCAAAACCGAACCAAACCGAACCAAAAATCCGAATGGATATCCGAAATATCCGAAATACAATTATATACCCAAAATACTAACTACAATTAGATTTAATAGCCTAAAATTACAATTATAAATCCAAAATATGAATTATTTTTATTCTGAAAATGATGAA
        TAGGCCTGGGC      TC GAA   GAATAA   TT                                                                                                                                                                                                                                                        
        |||||||||||      || |||   ||||||   ||                                                                                                                                                                                                                                                        A
        ATCCGGACCCG      AA GCC   TATAGG   GC                                                                                                                                                                                                                                                        
AGCCCTTG           -----C  -   ---      TAA  CCAAGCCAAGCCTATTAAGCCAAAAAGCCTAAAAGCCAAAAATCTAAATTTTGGGTAAGCCTATAAAAACCTTAAAGCCAAGCCCAAGCCAATATAAGCTAGCCCAAGCCAAGCCCAAGCCTATAGGTTTTTTATTATTTTAATTTATTTTTATTAATTTAAATTTATTTTAATCAATTTAAGTTTATTTTAAACCGTTTTAAATTTTTATATTGATTTTTGAATCATACAAATTTAATAAAACCTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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