SE0610084

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11062
  • Thellungiella halophila
  • SE0610084
  • Tc1/Mariner
  • St1
  • scaffold_3:7160503-7160756
  • TA
  • TACTCCCTCCGTTTCACAAAGAGTGTCGTTATGACATT

Secondary structure and sequence

TSD    TIR
5'



3' 
                              A       CTTCACA   AT   GAAATAAGATAAAATATCTCTTATATGCTTATTAATTTGCAGAAAATGACTCTTGGAATCATATTTATAATTAATTT
TACTCCCTCCGTTTCACAAAGAGTGTCGTT TGACATT       CAA  TAA                                                                             
|||||||||||||||||||||||||||||| |||||||       |||  |||                                                                             T
ATGAGGGAGGCAAAGTGTTTCTCACAGCAA ACTGTAA       AAA  AAC                                                                             
                              G       -----AA   --   AAAGTTTTTCTTACAGCAAAATCTTAAGGTTATATTAAAAATTGTATTTTATGGTAAAAATTGGAGTTATTTAAGTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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