SE0630086

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11064
  • Thellungiella halophila
  • SE0630086
  • hAT
  • Hat27
  • scaffold_3:8518042-8518394
  • ACTGTGGT
  • ACTGTGGTCAGTGCCGTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
           T       -------------CTA    TAGAGAGACCTAAGGTAAATTATAAAATTTATTATTCTTTTATTTTGTTTATTTTGAAATTTTATTTATAGTTGATATATTGTTAATATAATTATAGTTTTTATCAAACAAAATGTAATTTTAAATATCATAACACATTTTTTC
ACTGTGGTCAG GCCGTGC                GCCT                                                                                                                                                
||||||||||| |||||||                ||||                                                                                                                                                 
TGGTGTCAGTC CGGCACG                TTCC                                                                                                                                                
           T       AATATACATATTTTTT    ATAAACGGAATCCGGTGGTTTAAATAAAGATCAAAATTCCCGGTGTAAAAAATATTGAAATAGTTTTATACATTTTATGAACTAAAATAAACAATACATATCATCTTTCTATACATATATATATATATATATATATCTGTTGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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