SE0650087

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11065
  • Thellungiella halophila
  • SE0650087
  • PIF/harbinger
  • To26
  • scaffold_17:2206159-2206480
  • TAA
  • AGGGTCTGATTGGGAAGGACTGTGGTTGTAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G         G  --     G ---GG       T         - G  TGTAACTGTAAAGAATATAAAGAATTTTGGCTGTAAAATAATGGCTGTGACTTTAGAAAAAAATAAAAGCCACATATTTAGGTTTTTAGAACTTAAGTGTGGATTACGTGA
  AGG TCTGATTGG AA  GGACT T     TTGTAGA TTTAATTTT T AC                                                                                                               
  ||| ||||||||| ||  ||||| |     ||||||| ||||||||| | ||                                                                                                                
  TCC AGACTAACC TT  TTTGA A     GACATCT CTGAAATCT T TT                                                                                                               
AA   G         G  AA     G ATTTT       -         C -  TAATTTTCAGAATTTTTAGTAATTAATTGGTTAGTCTGAAATCACTTAATTGTTAAAAATTTCATTTTTTTGACAAGGATTTAAAAAAGCGTCGAAAGAGAAAGCTAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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