Plant MITE

SE0650089

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11067
Thellungiella halophila
SE0650089
PIF/harbinger
To15
scaffold_20:2612266-2612515
TAA
AGGCTTTGATTGGTAACTTTGCGGGATGGCGGAATTGCG

Secondary structure and sequence

TSD TIR

5'

3'

TA                   T                   GAAAAAATC    GG     - TTAA    CTTAT      CTT  CTGCGGAATGACTTTTCTTTTGTATTTTTGTTAAGCAAAAACGCAG
  AGGCTTTGATTGGTAACTT GCGGGATGGCGGAATTGCG         TTGC  AATAG A    GCAA     AAGTCG   TT                                              
  ||||||||||||||||||| |||||||||||||||||||         ||||  ||||| |    ||||     ||||||   ||                                              T
  TCCGAGACTAACCATTGGA CGCCTTACCGCCTTAACGC         TTTG  TGTTA G    ACGT     AAAAAC   GG                                              
AA                   -                   ----AAAAA    --     A ----    --CCA      ---  TTAGTTGTTTTTAAGCGCATTACTTTTTTATGTGTGTTTTTGCGTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0650089

TAAGGCTTTGATTGGTAACTTTGCGGGATGGCGGAATTGCGGAAAAAATCTTGCGGAATAGATTAAGCAACTTATAAGTCGCTTTTCTGCGGAATGACTTTTCTTTTGTATTTTTGTTAAGCAAAAACGCAGTCTGCGTTTTTGTGTGTATTTTTTCATTACGCGAATTTTTGTTGATTGGCAAAAAACCTGCAGAATTGTGTTTAAAAACGCAATTCCGCCATTCCGCAGGTTACCAATCAGAGCCTAA

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