SE3720005

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11073
  • Solanum lycopersicum
  • SE3720005
  • Mutator
  • M3
  • SL2.40ch02:47624316-47624787
  • TAATTTAAA
  • AGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATTTAA    CAACTTTCACATA     -    AAAAAAATCATA  ----   TTGTATAACAATAGTTTGCACAATTGCGCTCATAACAAATTTTATATTGCTATGGAACTTTTGATTTGTATAATTCGTTGTTACATCCAATTTTATACAAATTGTTCAGTTTTATATAAGTTCATCTATACATTGTAATTTGTATAATAAGATTTGTATTTGTATAATTATAAGTGAACAGAATGAAAATA
        AGAG             TAGCA AACA            TT    TGT                                                                                                                                                                                               
        ||||             ||||| ||||            ||    |||                                                                                                                                                                                               T
        TCTC             ATACT TATT            GT    TAA                                                                                                                                                                                               
AAATTTAA    ------TTTTAAC     T    ------------  TTTA   TTAAGTTTAATTTACAATATCAGTATCAAATAAAATAAACATTCAGCGTCGTTTGTAGAGTAAAAAAACAGTAGACTAAGCCATGTGTTAGTAAGTAAAAGCCATATGTTAATGGGTAAACCATATGTTTACATATTACACAAAACAAACATATTTCGTTCTTTTTTTACATATCTGTTTATGTTTATGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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