Plant MITE

SE3720009

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11077
Solanum lycopersicum
SE3720009
Mutator
M4
SL2.40ch03:46752573-46753217
TTAAAAGAA
C

Secondary structure and sequence

TSD TIR

5'

3'

TTAAAAGAAGGGAAA     ATATATAG   -----   AAAAATATAATTAA AA    --    -  C    --GT    ---            GTAGCTACATGTTATATGGAAGAGAGAGGTGAGCGATACTGGGAGAGAGAGGAGAGAGGAGAAAGAGAGGGGGAAAAGAGCGGGAGAAATATCAATTGTATATGTATATTGGTTAGATAATTGTATATTATAAATATGTATTTGTATATATGGCAAGAGAGATTGGGAGAGGGAGGAGAGAGGTGAGCGAGACAGAGAGAGGGAGGAGAGAGGCGAGCGGGAGAGAGGTGAAATGTATATTATTGTAT
               CTTTC        TCA     CTT              T  CTCT  CCAT AG TATA    TTTA   TAATTACAGTTT                                                                                                                                                                                                                                                        
               |||||        |||     |||              |  ||||  |||| || ||||    ||||   ||||||||||||                                                                                                                                                                                                                                                         
               TCCTC        TTT     CGT              C  TTTC  TTAA TA TATA    TAAT   TAGTATCAATAT                                                                                                                                                                                                                                                        
        AAGAAAA     --------   AAATG   -------------- -G    AT    A  -    AAAT    AAG            TAAACGATATTATATTGAGTGCTGATTGTAATATGTAATTAACGTACCCAAATGAAGCTTAAACATATTAATCAATACAAACATATACATATTAAGTGGTCTTATATGTTTATGTATGCATAGTTATATATTAATAAATTGGATATATGTATATTTTAAGTGGAGAGAGGGTAAGAGACAGGAGAAAGAGAACGGAAAGAGGAGAGAGGGTTAGAGCGAACGGGATATATGTTTACATATACATATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720009

TTAAAAGAAGGGAAACTTTCATATATAGTCACTTAAAAATATAATTAATAACTCTCCATAGCTATAGTTTTATAATTACAGTTTGTAGCTACATGTTATATGGAAGAGAGAGGTGAGCGATACTGGGAGAGAGAGGAGAGAGGAGAAAGAGAGGGGGAAAAGAGCGGGAGAAATATCAATTGTATATGTATATTGGTTAGATAATTGTATATTATAAATATGTATTTGTATATATGGCAAGAGAGATTGGGAGAGGGAGGAGAGAGGTGAGCGAGACAGAGAGAGGGAGGAGAGAGGCGAGCGGGAGAGAGGTGAAATGTATATTATTGTATATTATACATATACATTTGTATATAGGGCAAGCGAGATTGGGAGAGAGGAGAAAGGCAAGAGAAAGAGGACAGAGAATGGGAGAGAGGTGAATTTTATATGTATATAGGTTAAATAATTATATATTGATACGTATGTATTTGTATATTCTGGTGAATTATACATATACAAACATAACTAATTATACAAATTCGAAGTAAACCCATGCAATTAATGTATAATGTTAGTCGTGAGTTATATTATAGCAAATTATAACTATGATGAATAATTAAAATATATAAATTTACTTTGCTGCGTAAATTTCTCCTAAAAGAA

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