SE3720012

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11080
  • Solanum lycopersicum
  • SE3720012
  • Mutator
  • M4
  • SL2.40ch10:45849888-45850574
  • TTTAATATT
  • GTTAAACAAACTTATAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAATATTGGAAAAATTATACG      --CA     A   TACT       TCATCATAACTATGTTTGCTATAATTATCACTCACGACTAACATTATACATTAATTATGTGGGTCGACTTCAAATTTGTATAATTAGCTACATTTGTATATGTATAATTCGCCAGAATATACAAATACATATGTATAATATATAGTTATTTAATCAATATACCTACACAATTCACCTCTCTCGCTCGCCTCTTTCCTCTCTCTCCCAATCTCACTTCCTTTTTATACAAATGCATATGTATAATTTACAATTGTCTAACCAATATACATATACAATTCACCTCCCTCTCACACTCTGCCCT
                       GTTAAA    AACTT TAC    TAATTAT                                                                                                                                                                                                                                                                                                             
                       ||||||    ||||| |||    |||||||                                                                                                                                                                                                                                                                                                             C
                       TAATTT    TTGAA GTG    TCGGTGA                                                                                                                                                                                                                                                                                                             
                    TTA      CCTC     A   TATA       TTTTTTATCGGATTAATGAGAGGTATCGATATCAAACTATTAATGTTAAGCATCGATGTACAATATCCCTCCTCTCTCCACTCGTTCTTACCTCTCTCCTCTCTCCTCTCTCCGCTCTCTCTCCCTTTTTCACCCTCTCTCCACTTAACATATACATTTAACCATTTTATTAACATATAATATGTATAAATAAACATATATACCGTTCGCTCTAGCTCGCTCTCTCCTCTCTTCGTTCGGTCTAGTCCTTTCCCTCCTCTCTCCGCTCGCTCAAATCCTCCCTCCTCTCTCCGCTCGTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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