SE3720018

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11086
  • Solanum lycopersicum
  • SE3720018
  • Mutator
  • M8
  • SL2.40ch11:36706895-36707304
  • TTCTTAATT
  • GGGAAACTTACA

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTCTTAATT      C     TAAAT    --TA     AAAAAATATTTACCATTTATAGCAATAGTATATTTTTTTCACTTGATCAGTTTTAATTCATTTATAATACAAGTTTAATACATATTATAAAGAACAATTTATTATTCACATATAATACAAGTTCTAATAATGGATAATATATTTATCACACATTTTAATACATTTAT
          GGGAAA TTACA     ATAC    AAATA                                                                                                                                                                       
          |||||| |||||     ||||    |||||                                                                                                                                                                        
          CTTTTT AATGT     TATG    ATTAT                                                                                                                                                                       
TTAATTCTTT      T     -TAAC    TAAA     TTATTAATGACTAAAATCGCTATAAAAAATAAATAATAATAAATATCGTTATAATATAATTTATATATTATACTTAATTTTCACTTAATACATACGTTATATATACTTAATATTAACAAAAGATTTTATATAATGCAAAGAAACCATTTTTAAACTATGTAACATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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