SE3750020

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11088
  • Solanum lycopersicum
  • SE3750020
  • PIF/harbinger
  • To2
  • SL2.40ch08:4004680-4005438
  • TAA
  • AGGCCTCATTTGTTTGCACTTAATGGAGGTCTGAATCTTAAT

Secondary structure and sequence

TSD    TIR
5'



3'
TA               G  C    ----T              T   AATTTAGATTCA  T    AATT     T      -   ----------      -  CA     ATTCAGATTCAACTCATTAAGTTTATTTGTCTTATTTTTTTAAAACCTCTTAATGAGTCTGAAGAGGTCTGAACGAATCAGATCTGTAGGAGACTCTTAACAATATTCAGACTCATTTGATAAGCTATCAAATAATAAATTATAGCTTTTTTGCTTTGGGCATGCCTTTTTATCTCATAATTAAAAACTTTCTTTCTCACTTTTCACAATCAAACACCATCTTTTCCAATTGGTAAGTTTTCATAAATCCTTTTCAAGTATTTTTTTTATATTAATAATTTT
  AGGCCTCATTTGTTT CA TTAA     GGAGGTCTGAATCT AAT            GC CATT    GTGTT GGTTTT CAG          GTCTGA AT  GAATC                                                                                                                                                                                                                                                                                          
  ||||||||||||||| || ||||     |||||||||||||| |||            || ||||    ||||| |||||| |||          |||||| ||  |||||                                                                                                                                                                                                                                                                                          C
  TCCGGAGTAAACAAA GT AATT     TCTTCAGACTTAGA TTA            TG GTAG    TATAA TCAAAA GTC          CACAAA CT  AGACT                                                                                                                                                                                                                                                                                          
AA               G  -    CTAAT              C   ------------  T    -ACT     T      C   ATTCTAAACC      A  --     TATGTGTAGTATTTAATTCTACACCAGAGATTTAGATTTGTGATTTATATTACAATAAACAAAAGTTATTGATTTACACCTTCTACTTTAACTTGTAATATGATTATTTATAATATTTTAAAAGTAAAGTTGTTTTATATAGTAAAAAAAATATATTTTTTCTTCAAAATTTTCAAAATTATTAGTACTAAACCTCATGATAATAAAGTAAGTTTTTAGAACTAGTATTGTTATGTGGTCTTTATAATAACGTTGGTCACAAGAACTATGTGTAGTTATGTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End