SE3720021

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11089
  • Solanum lycopersicum
  • SE3720021
  • Mutator
  • M2
  • SL2.40ch11:13314176-13314502
  • AAAAATTAA
  • GGGAAAATACCCAAGTACCCCCTCAACCTATGCCTGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTAAATGTAATTTTCTACCCCTTTTTAGCCTACGTGGCACTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAAATTAA    A   A                                                                                       AAT    T   C              C            GT  GAAAGAAAAAG     TA
         GGGA AAT CCCAAGTACCCCCTCAACCTATGCCTGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTA   GTAA TTT TACCCCTTTTTAGC TACGTGGCACTA  TC           TCAAC  
         |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||| |||||||||||||| ||||||||||||  ||           |||||   
         CCCT TTA GGGTTCATGGGGGAGTTGGATACGGGCTTTAGAGTCTCTGTGTGAATATGATATGATTCCAGGATAATGGGGGGACTTGAATAAAAT   TATT AAA ATGGGGAAAAATCG ATGCACCGTGAT  AG           GGTTG  
AATTAAAAA    A   C                                                                                       AAT    C   A              A            --  ---AATACCCG     CT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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