SE3720025

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11093
  • Solanum lycopersicum
  • SE3720025
  • Mutator
  • M8
  • SL2.40ch01:69029133-69029541
  • TTCATTAAT
  • ATTAATGGAAAATTTACATAAATATATTATAATAAAAAATA

Secondary structure and sequence

TSD    TIR
5'



3'
TTC      ---      T          A  T    --A         -----------T   TCATTTATAATAATAATATTTTTTTTCACTTGACCATTTTTAATTCATTTTATAATACAAGTTTAATACATATTATAAAGAACAATTTATTATTCACATATAATACAAGTTTTAATGATGGATAATGTATTTATCACACATTTTAATACA
   ATTAAT   GGAAAA TTACATAAAT TA TATA   TAAAAAATA            TTA                                                                                                                                                      
   ||||||   |||||| |||||||||| || ||||   |||||||||            |||                                                                                                                                                      C
   TAATTA   CCTTTT AATGTATTTG AT ATGT   ATTTTTTAT            TCG                                                                                                                                                      
         CTT      T          -  T    AAA         TAATTACTAAAA   CTATGAAAAACAAATAATAGTAAATATCGTTATAACGCTATTAGACATTATACATAATTTTCACTTAATACATACGTTATATAAACTTAATATTAACAAAAACTTTATATAATACAAACAATCCATTTTTTAACAGTATAACATAATATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End