SE3720027

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11095
  • Solanum lycopersicum
  • SE3720027
  • Mutator
  • M8
  • SL2.40ch07:64735691-64736101
  • TAATTAGTA
  • TAATTAGTAGGAAAAATTACATAAATTGATAC

Secondary structure and sequence

TSD    TIR
5'



3' 
          TA     AA          TG    ---         AATAATTACTGATTTTAGCAATACTTTTTATTTATTATCATTTATAGCAATACTATGTTATATCTGTCATATGTATTAAAAGTGAATTATGTATGCAATATATATGAATTATAATTGTTTTTAAAAATGTATTTTGTTTGTTTGGTAAAAGTTTGACACATTGT
   TAATTAG  GGAAA  TTACATAAAT  ATAC   ATGTTAATA                                                                                                                                                                    
   |||||||  |||||  ||||||||||  ||||   |||||||||                                                                                                                                                                     
   ATTAATC  CCTTT  AATGTATTTA  TATG   TTATTGTTT                                                                                                                                                                    
ATA       --     -G          --    ATA         TATAAATAGTAAATACAGTTATTATAAAAAAAAATGAACTAGTGAAAATTAAGTAAATATTATGTTCAAATTAAGCATAATGTTTCTTGTTAAAAAATAAGTGTACATATGTTTAAAATTACTATTTATTAAATAAAATAGTGTATAAAATTAAGTGAACATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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