SE3720031

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11099
  • Solanum lycopersicum
  • SE3720031
  • Mutator
  • M4
  • SL2.40ch07:56326296-56327026
  • TTGCTTCAA
  • T

Secondary structure and sequence

TSD    TIR
5'



3'
       --  AAGGGAAA    ------ A  TATAA -     AAAAATAATTAATTA   -   A  -  ---    - T  - ATAATTACAATTTGTAGCTACATGTTATTTGGAGGAGAGACGAAAGTGAGACTGGGAGAGAGGGGGGGGGGGGGGGGAAGAGTGGGAGAAAAGGTGAATTGTATATGTATTTTGGTTAGAATTGTATATTATACATATGTAACTGTATATATGGTAAGAGAGATTGGGAGAGGGAGGAGAGAGGCGAGCGAGACTGGGAGAGAGAAGAGAGAGGTGAGCGAGGCTGGGAGAGAGAGGTGAGCGAGATTGAGAGAGGCGAGCGAGATCGGAGAGGCAAACGAGAGTGGGAGAGAGGTGAATTGT
  TTGCT  TC        CTTT      C CA     C CACTT               CTC TCT TA GC   TATA G TT G                                                                                                                                                                                                                                                                                                               
  |||||  ||        ||||      | ||     | |||||               ||| ||| || ||   |||| | || |                                                                                                                                                                                                                                                                                                                
  CTTCG  CC        CTTT      G CC     T TTTGT               TTG ATA TG TA   TAAT A GT G                                                                                                                                                                                                                                                                                                               
AA     TT  --------    TAATGC -  ----- A     ---------------   A   -  A  AAT    G -  A TACCGATATCAAACGATATTAATGGTCAGCGCTGATTGTAATATGTAATTAATGCACCCGATTGAAGCTCAAACATATTAATCGTACAAACATACACATATCAAGCGGTCCTATATGTTTATTTATACATATTATATATTAAAAAATCGGATATATGTATATGTTAAGTGGAGAGAGGGTGAGAAACGGGAGAGAGGAGGGAGAGAGTTAGAGCGAGCGGAGAGAGAAGGGAGAGGGTTAGAGCGAACGGTAAATATGTTTACATATACATATTATATGTTAATATATGTTGATATATGTATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End