SE3720038

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11106
  • Solanum lycopersicum
  • SE3720038
  • Mutator
  • M3
  • SL2.40ch02:47624316-47624787
  • TTTAAATTA
  • TTAGAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAAA       AAATTG    --- A    ----  AAAT   AATTCAAATTAAATGTTATAGTCATAGTTTATTTTATTTGTAAGTCGCAGCAAACATCTCATTTTTTTGTCATCTGATTCGGTACACAATCATTCATTTTCGGTATACAATTACCCATTTGGTATACAAATGTATAATGTGTTTTGTTTGTATAAAGCAAGAAAAAAATGTATAGACAAATACAAATACATATATTTTCAT
      TTAGAGA      TATG   A ATAA    CA    ATT                                                                                                                                                                                                         
      |||||||      ||||   | ||||    ||    |||                                                                                                                                                                                                          
      AATTTCT      CGTT   A GTGT    CG    TTT                                                                                                                                                                                                         
  ATTA       ------    GAA -    ATAT  ----   GTTTTTTTTAGTATAAACAAACATATTGTTATCAAACGTGTTAACGCGAGTATTGTTTAAAATATAACGATACCTTGAAAACTAAACATATTAAGCAACAATGTAGGTTAAAATATGTTTAACAAGTCAAAATATATTCAAGTAGATATGTAACATTAAACATATTATTCTAAACATAAACATATTAATATTCACTTGTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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