SE3720039

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11107
  • Solanum lycopersicum
  • SE3720039
  • Mutator
  • M6
  • SL2.40ch09:63834019-63834780
  • TAAAATTAA
  • AGGGAAAATTGTATATAATAGCAAACTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAATTA    AA    -G      A       CT  -TAACCTAAAATAA   AA     T        ATTTA             A       -T    --AA       CA    TCTCTCTCCCAAAAATCTCGCTCGCCACTCTCCATTCTTGCTCGCTTCTCGCTTTATACACAAAAGTGTATAAATTCTGTTTCTGTTTTGAATAAAGCGAGAGAAAATTGTATATACACATGCAAAAATTTATATCTTCGTGTTATACACTTAATTATACAATTTACAAACATTTTACTTCAAATATTGCAGAGAAAAAGGCCAACGAATTATACAATTGCAGTAAAATATAATTTTCTCTAGCTTTATACAACATAAGTGTATAT
        AGGG  AATT  TATATA TAGCAAA  AA              ATG  ATAGC AGGGTTTG     ATTGTGCTCCATA CAAATGT  AGCT    AATTTGT  GGCG                                                                                                                                                                                                                                                                          
        ||||  ||||  |||||| |||||||  ||              |||  ||||| ||||||||     ||||||||||||| |||||||  ||||    |||||||  ||||                                                                                                                                                                                                                                                                          A
        TCCC  TTGA  GTGTAT ATCGTTT  TT              TAC  TATTG TTTCAAAC     TAACGCGAGGTAT GTTTGTA  TTGA    TTAAGCG  ATAT                                                                                                                                                                                                                                                                          
AATTAAAA    -G    AA      -       AT  TTTAAGTATAAACA   GA     -        -GTAC             C       TT    CATA       --    GTATATGTTAACATATTAAGCGACCGGATTTAACATATTAAGCTACCGGATAAAGCGACGTTAACATATTAAGCGATAGGATAAAGTGACGCTAACATATTACGTGTTAACATATTAAGCGACGGATAAAGCGACGTTATAAAAATATTTTAAACGAAACGCATGTCAACTTAGCTTAATTTTACATACATATAACGTATTAATATTCACATATCGTTCTTCTATATATACAAAAAGAGAGCGAAATATGTTTTTGTCTTTGTGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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