SE3720048

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11116
  • Solanum lycopersicum
  • SE3720048
  • Mutator
  • M8
  • SL2.40ch03:48532914-48533323
  • TACATAATA
  • GGAAAAATTACATGAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TACATAATA     AA          TAAT    TT     -    AC     ATTTTAGCGATACTTTTTATTTATTACCATTTATAGCAATATTGTGATGAATCTGTAACATGTATTAAAAGTGAATTATTTATGCAATATATTTGAATTATAATTTTTTTAAAAAATATATTATATTTATTTGGTAAAAAATGGTCACATTAT
          GGAAA  TTACATGAAT    ATAT  TAAAA AATA  TATTG                                                                                                                                                         
          |||||  ||||||||||    ||||  ||||| ||||  |||||                                                                                                                                                         A
          CCTTT  AATGTATTTA    TATA  ATTTT TTAT  AATGG                                                                                                                                                         
ATAATACATC     -G          -CAC    TT     A    -A     TAAATATCACTATTGTAAAAAAGATGAACTAGTGAAAATTAAGTAAATATTATGTTCGAATTACGTATAATGTTTCTTGTTAAATAATAAGTGTATATTATGTTCAGAATTACTACTTATTAAGTAAATAGTGTGTAAAATTATGTGAATATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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