SE3720049

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11117
  • Solanum lycopersicum
  • SE3720049
  • Mutator
  • M8
  • SL2.40ch01:1266591-1266928
  • AATAATTAT
  • ATAATTATGGGAAACTTACATAAATATAC

Secondary structure and sequence

TSD    TIR
5'



3' 
A        -      C TA       --    TATAA          T    -----------------------------        A       ATTTTTTTT       CCACTTTTAATGTGGATAATACAGTTATCATAAATTTTAATACACTTATAATACAATGTGGCAATTTTTTACCAA
 ATAATTAT GGGAAA T  CATAAAT  ATAC     TTAAAAAATA TTAC                             CATTTATA CAATAAT         CACTTGA                                                                           
 |||||||| |||||| |  |||||||  ||||     |||||||||| ||||                             |||||||| |||||||         |||||||                                                                           A
 TATTAATA CCTTTT A  GTATTTA  TATG     AATTTTTTAT AATG                             GTAAATAT GTTATTA         TATTTAG                                                                           
         A      T AG       AT    --TAA          T    ACTAAAATCGCTATAAAAAATAAATAATA        C       ------CAT       ACATTATACATGATTTTCACTGAATACATACGTTATATAAACTTAATATTAACAAAAATGTTATATGATACAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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