SE3720052

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11120
  • Solanum lycopersicum
  • SE3720052
  • Mutator
  • M5
  • SL2.40ch01:86738544-86738860
  • TTCTTTAAA
  • AAGGGAAAAGAGTCTGAAAAATACTCTAACTTTAATCGAAATTGTTGTTATGATACCAAATTTTATGGAGGACCTTTTTACCCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCTTTA                   A   C   -      A       T               A      AT            T  -    ATGA           A      T   C         G  G       A   ------------   T    TT
       AAGGGAAAAGAGTCTGAAA ATA TCT AACTTT ATCGAAA TGTTGTTATGATACC AATTTT  GGAGGACCTTTT AC CCTC    ACTATTTAATA TGTATT TAA GGTATATGT TG CCACGTG ACA            CAT ATTA  
       ||||||||||||||||||| ||| ||| |||||| ||||||| ||||||||||||||| ||||||  |||||||||||| || ||||    ||||||||||| |||||| ||| ||||||||| || ||||||| |||            ||| ||||   
       TTCCTTTTTTTCAGACTTT TAT AGA TTGAAA TGGCTTT ATAACAATGCTATGG TTGAAA  TTTCCTGGAAAA TG GGGG    TGATGAATTAT ACATAA ATT CTATATATA AT GGTGCAC TGT            GTA TAAT  
AAATTTC                   A   -   C      C       C               G      CC            -  A    -ATG           C      T   T         A  G       C   ATTTTTTATAAC   T    AT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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