SE3720054

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11122
  • Solanum lycopersicum
  • SE3720054
  • Mutator
  • M11
  • SL2.40ch01:87548205-87548667
  • AAATAATTC
  • GAGGTTTTAACCAAACTAAGTCATTATATAAAGTCATTCACCAAAATAATATGTTTTTTTAAAATTTTACAAAACTAGTATAAACGTATTCCACAGTAATGTTTTAGGATATATTTTATTTTTTAAAAGTTGATGGGTCAGATTGATATACGTTAC

Secondary structure and sequence

TSD    TIR
5'



3'
AAATAATTC   G                              C   C      A                                      -      C  CA             A        A   --TTT            -GTC  A              ACAC            GGAG          CTCA       A                     C
         GAG TTTTAACCAAACTAAGTCATTATATAAAGT ATT ACCAAA TAATATGTTTTTTTAAAATTTTACAAAACTAGTATAAA CGTATT CA  GTAATGTTTTAGG TATATTTT TTT     AAAAGTTGATGG    AG TTGATATACGTTAC    AGTAACGTTTTA    TAAAACGTTA    CAGTAAC TTTTACTCCTAAAACGTTACT 
         ||| |||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| ||  ||||||||||||| |||||||| |||     ||||||||||||    || ||||||||||||||    ||||||||||||    ||||||||||    ||||||| ||||||||||||||||||||| A
         CTT AAAATTGGTTTGATTCGGTAATATATTTTA TAA TGGTTT ATTATGTAAAAAAATTTTAAAATGTTTTGATCATGTTT GCATAA GT  CATTGCAAAATCC ATATAAAA AAA     TTTTTGATTGTT    TC AACTATATGCAATG    TCATTGCAAAAT    ATTTTGCAAT    GTCATTG AAAATGAGGATTTTGTAATGA 
CTTAATAAA   A                              T   A      C                                      T      A  AC             C        A   TTTTT            GTAA  C              ACAT            GAGG          AAAA       C                     T

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End