SE3720062

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11130
  • Solanum lycopersicum
  • SE3720062
  • Mutator
  • M3
  • SL2.40ch04:5020545-5021241
  • TTGTATTGT
  • TTGTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
                      -------     --- CAACTTTCACATATAGCAAACAAAAAATTCATATTTGTATGCTATAACATACTTTGCATAATTGCGCTCCATAGCAAACATAAAATTGTATAATTCGCTATACACATACAAGTGTATAATTCGCTGGCCTAAATTGTATAATTCGCTGGCCTATTTCGCTGCAATTGTATAATTCGCTATCCTATTTCACTGCAATTGTATAATGCATAATTGTATAAGTCACTACCTATTTCGCTGCAATATTAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTAT
                TTGTAT       TGTGG   G                                                                                                                                                                                                                                                                                                                                   
                ||||||       |||||   |                                                                                                                                                                                                                                                                                                                                   A
                AACATA       GTTTG   A                                                                                                                                                                                                                                                                                                                                   
TGTTATGTTCCCTTTT      TATTATT     ATT TTGGATTTTATTTACCTTATCAATCCCAAACTAAATTAACACGAGGTATCGTTTGCAATCGATTTTAAACGGTCGCAGAGAGAGGGTTTTCAGAGCGAGCGGTGAAAGGTAAGAGCGAGCGGAGAGAACGAAATATGTGTCTTCACATATTAAGACAAAAACAAAACATATTTCACTCTCTTTTAACATTTATGTGTACGTTTTTGTATATAGAAGCACAATATGTGAATTAATATGTTAAATGTTTGTAAAATGAAGTTTATAACGTCTCTTTTTCCAGTTGCTTAATATGTTAACATCACTTTATGTTAAAAGAGATCGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End
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