SE3720065

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11133
  • Solanum lycopersicum
  • SE3720065
  • Mutator
  • M13
  • SL2.40ch07:49228273-49228799
  • TATAATAAA
  • AGGGAAAAGGTCAAATATGCCATCGAATTTTCAGAAAAGGCTCATTAATGTCATTCGTTAAAAATTTGGCTCATTTATGCCACTACCGT

Secondary structure and sequence

TSD    TIR
5'



3'
TATAATAA          -             C         G      C     A       TC   A   A     CTC       C  C  C   -CCAA             G                  T   A                 T      A               T          -               AAACATCATAATTCTGAAAAAAAATTGAATTAATTTTTTTTATTATTAAAAATTTGAT
        AGGGAAAAGG TCAAATATGCCAT GAATTTTCA AAAAGG TCATT ATGTCAT  GTT AAA TTTGG   ATTTATG CA TA CGT     GAAAAGGCTCATT ATGCCATTATTTTTTAAC GTG TTTTGCAAAACCATTTT ACACGT GCCAATTATAATTCG CCACGTCATC AAATTTTTAAAATAA                                                          
        |||||||||| ||||||||||||| ||||||||| |||||| ||||| |||||||  ||| ||| |||||   ||||||| || || |||     ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| |||||| ||||||||||||||| |||||||||| |||||||||||||||                                                           
        TCCTTTTTCC AGTTTATACGGTA TTTGAAAGT TTTTTT AGTAA TACAGTA  CAA TTT AAACC   TAAATAC GT AT GCA     TTTTTTTGGGTAA TACGGTAATAAAAAATTG TAC AAAACGTTTTGGTAAAA TGTGCA CGGTTAATATTAAGC GGTGTAGTAC TTTTTTTTAATTAAG                                                          
AAATAATA          G             A         G      A     A       TT   C   C     AAA       A  A  A   ATACC             G                  T   C                 C      C               T          T               TCAAAAATAAGTCTTAAAATTAAAAAAAACTGTACCTGCTTCATATTAACCTGTGCAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End