SE3710066

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11134
  • Solanum lycopersicum
  • SE3710066
  • Tc1/Mariner
  • St3
  • SL2.40ch06:34504122-34504371
  • TA
  • TACTCCCTCCGTTTCAAAAAAAAGACCT

Secondary structure and sequence

TSD    TIR
5'



3' 
                A   A  -     CTTTTCCTCT    TT  ---        --    TGACCTCTTTTTTTTTGGTAACATTTTAATTTCAGCATTCCATGTGGCATGTTTAAGGCCATAAG
TACTCCCTCCGTTTCA AAA AA GACCT          TTAG  TG   TTTCAAAA  AGAA                                                                 
|||||||||||||||| ||| || |||||          ||||  ||   ||||||||  ||||                                                                 A
ATGAGGGAGGCAAAGT TTT TT CTGGA          ACTG  TG   CAAATTCT  TATT                                                                 
                G   C  A     -CCAAACTGA    --  TTT        TA    TCTTCTTAAAACTTAGAACACCAGGATTTAATTTCAATCCAGTTTACATGTTTAAACAGGAAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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