Plant MITE

SE3720067

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11135
Solanum lycopersicum
SE3720067
Mutator
M2
SL2.40ch08:43354057-43354381
TTATTTGAT
TTATTTGATGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATATTTTACCCTTTTCGACCTACGTGGCACTATCTTG

Secondary structure and sequence

TSD TIR

5'

3'

    TT   T    T     C          C                     A                                    C                TAA    A        -      A              TC   ----TGGGCC    GA
 TTA  TGA GGGA AATGC CAAGTACCCC TCAACCTATGCCCGAAATCTC GAGACACACTTATACTATACTAAGGTCCTATTACCC CCTGAACTTATTTTAT   TAAT TTTTACCC TTTTCG CCTACGTGGCACTA  TTG          CAAC  
 |||  ||| |||| ||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||   |||| |||||||| |||||| ||||||||||||||  |||          ||||   
 AGT  ATT CCCT TTACG GTTCATGGGG AGTTGGATACGGGCTTTAGGG CTCTGTGTGAATATGATATGATTCCAGGATAATGGG GGACTTGAATAAAATA   ATTA AAGATGGG AAAAGT GGATGCACCGTGAT  AAC          GTTG  
T   TT   -    T     T          A                     C                                    A                TTC    A        G      C              CA   TTTTTTTTCA    GT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720067

TTATTTGATGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATATTTTACCCTTTTCGACCTACGTGGCACTATCTTGTGGGCCCAACGATGGTTGACTTTTTTTTCAAACTAGTGCCACGTAGGCTGAAAAGGGGTAGAAAATTACTTATAAAATAAGTTCAGGAGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCCGGGATTTCGGGCATAGGTTGAAGGGGTACTTGTGCATTTTCCCTTATTTGAT

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