SE3720072

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11140
  • Solanum lycopersicum
  • SE3720072
  • Mutator
  • M8
  • SL2.40ch02:29835792-29836189
  • TTTATACTT
  • TATACTTGGAAAAATTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
 TT    CTT     AA    ----        ATGTCTTTTAATAAATAATTACTGATTTTTGCAATACATTTTATTTGTTATCATTTATAGCAATACTATGTTAAATCTGCAATATGTATTAAAAATGAATTAAGTATGCAATATATATGTATTATAACTATTTTAAAAAATATTTACGTTTGTTTGGTAAGAAGTTAAC
   TATA   GGAAA  TTAC    TTGGAGGA                                                                                                                                                                         
   ||||   |||||  ||||    ||||||||                                                                                                                                                                          
   ATAT   CCTTT  AATG    TATATGAT                                                                                                                                                                         
TTC    TTC     -G    TATG        ACTTATTTTTTATAAATGGTAAATATCGTTATTGTTAAAAAAGTGAAATAGTGAAAATCATGTAAATGTTATGTGAAAATTAAGTATAATGTTTTTTGTTAAATAATAAGTGTATTTTATGTTCAAAAAAACTACCTAGAGTGTAAAAATATGTGAATATTATGTTACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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