SE3720077

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11145
  • Solanum lycopersicum
  • SE3720077
  • Mutator
  • M2
  • SL2.40ch10:59007189-59007516
  • AATATTTTA
  • GGGAAAATGTACAAGTATTCCTTCAATCTATGCCCGAAATTCCAGAGACACACTTATACTATACTAAGGTTCTATTACCCTCTTGAACTTATTTTATAAGTAATTTTCTATCCTTTTTTCGACCTACGTGGCACTAGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
AATATTTTA    A      C      -    TC        C        C                C                    -    T             A            -      TT   A            T     GAAAAAAAAAGTCAA   TC
         GGGA AATGTA AAGTAT TCCT  AATCTATG CCGAAATT CAGAGACACACTTATA TATACTAAGGTTCTATTACC CTCT GAACTTATTTTAT AGTAATTTTCTA TCCTTT  TCG CCTACGTGGCAC AGTTT               CCA  
         |||| |||||| |||||| ||||  |||||||| |||||||| |||||||||||||||| |||||||||||||||||||| |||| ||||||||||||| |||||||||||| ||||||  ||| |||||||||||| |||||               |||   
         CCCT TTACGT TTCATG AGGA  TTAGATAC GGCTTTAG GTCTCTGTGTGAATAT ATATGATTCCAGGATAATGG GAGA CTTGAATAAAATA TTATTAAAAGAT AGGAAA  AGC GGATGCACCGTG TTAGA               GGT  
ATTTTATAA    A      A      G    -T        A        A                A                    A    -             A            G      --   C            -     --------ACACCCG   TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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