Plant MITE

SE3720079

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11147
Solanum lycopersicum
SE3720079
Mutator
M6
SL2.40ch06:36241813-36242596
ATATTACAT
GGATAATTATATGTAATAGCAAAC

Secondary structure and sequence

TSD TIR

5'

3'

ATATTACATG        -A      A        TAATAACCT     AA   -AA   -     -----      AT   A                 CGTTAGCCAAAGTTTGTCAATCTCCTCTCTCCCAAAAATC    - C   A T    CTCTACTCGCCTCTCTCGCTTTATACACATAAGTGTATAAATTGTGTTTCTGTTTTGTATAAAGCGAGAGAAAATTATATATACACATGCAAAAACATATATTTTCGTGCTATACACTTAATTATACAATTTACAAACATTTTACTTCAATTCAATTGCAGACAAATGCAATTTTTATACAAATATTGCAGCGAAAAAGGCCAACGAATTATACAATTGCGAATTATACAATTGTAGTGAAATACAATTTTCTCTCGCTTTATACA
          GGATAATT  TATGTA TAGCAAAC         AAAAT  ATG   GTA GCTAT     GGTTTG  TTA TTGTGCTCCATAGCAAA                                        TCGC T GCC C CTCC                                                                                                                                                                                                                                                                          
          ||||||||  |||||| ||||||||         |||||  |||   ||| |||||     ||||||  ||| |||||||||||||||||                                        |||| | ||| | ||||                                                                                                                                                                                                                                                                           
          CCTGTTGA  GTGTAT GTTGTTTG         TTTTA  TAT   CAT CGATA     TCAAAC  AGT AACACGAGGTGTCGTTT                                        ATAT T TGA C ATAT                                                                                                                                                                                                                                                                          
 TACATTATA        AA      -        -------TT     AG   AAA   A     TGGTT      GT   -                 ----------------------------------------    T -   - -    TAAGCGATATGTATATGTTAACATATTAAGCGACCGGATAAAGCGACATTAACATATTAAGCTATAGGATAAAGTGACGTTAACAAATTACGTGTTAACATATTAAGCGAGGGATAAAGCGACGTTATAAACATATTTTAAACGAAACGTATGTTAACTTAGCTTCATTTTACATACATATAACGTATTAATATTCACATATCCTTCTTCTATATATAAAAAGAGAGCAAAATATGTTTTATCTTTGTGTTATATATGTGAAAACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720079

ATATTACATGGGATAATTATATGTAATAGCAAACTAATAACCTAAAATAAATGAAGTAGCTATGGTTTGATTTAATTGTGCTCCATAGCAAACGTTAGCCAAAGTTTGTCAATCTCCTCTCTCCCAAAAATCTCGCTCGCCACTCTCCCTCTACTCGCCTCTCTCGCTTTATACACATAAGTGTATAAATTGTGTTTCTGTTTTGTATAAAGCGAGAGAAAATTATATATACACATGCAAAAACATATATTTTCGTGCTATACACTTAATTATACAATTTACAAACATTTTACTTCAATTCAATTGCAGACAAATGCAATTTTTATACAAATATTGCAGCGAAAAAGGCCAACGAATTATACAATTGCGAATTATACAATTGTAGTGAAATACAATTTTCTCTCGCTTTATACAACAAAAGTGTATATATTGTGTTTCTATTTTGTATAAAACGAGAGAAAAATATATATCTTCTTCCTATACACTTATAATTATGCAATATACATACATTTTACTTCGATTCAATTGTATGCAAAGCAAATTTTATACAAATATTGCAGCGAAATAGGGAGCGAATTATACAATTGTGCATTAAACAATTGCAGTGAAATAGGATATCGAATTATACAATTACAGCGAAATAGGCCAGCGAATTATACAATTGTATATGTATAGCGAATTATACAGTTTTATATTTGCTGTGGAGCACAATGATGCAAACTTTGGTATAGCATACAAATATGAATTTTTTGTTTGTTGTATGTGAAAGTTGTCCATATTACAT

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