SE3720084

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11152
  • Solanum lycopersicum
  • SE3720084
  • Mutator
  • M8
  • SL2.40ch09:60228753-60229127
  • TACTAATTA
  • TTACATAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTAATTAAAC      A   ------------     ATAACAAAAAGTATTTACCATTTATTGCAATAATATTTTTTTTCTTGATCACTTTTAATTCATTTATAATACAAGTTTAATACATATTACAAAGAATAATTTCTGATACACATATAACACAAGTTTTAATAATGAATCATACAATTATCACATATC
            TTACAT AAT            ATACT                                                                                                                                                            
            |||||| |||            |||||                                                                                                                                                             
            AATGTG TTA            TATTT                                                                                                                                                            
   TACTTTTTT      C   ATCATGTAAAAT     ATTAATTACTAAAATCACTATGAAAAAATAAATAATGGTAAATATCGTTATAATGCAATTTAGACGTTACAGACAATTTTCATTTAATACATACGTTATATGTACTTTATATTAACAAACTATTTTTAAACTGTGTAACACAATATTCACATAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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