SE3710089

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11157
  • Solanum lycopersicum
  • SE3710089
  • Tc1/Mariner
  • St3
  • SL2.40ch09:67593852-67594102
  • TA
  • TACTCCCTCCGTTTCAAAAATGATAGCCTAGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
              C        TA -   A    -----------    - GGAACGGAGTTTAAGAATAAAAAAAAGACTTTCTAATCTTGTGGTTCTAAATTAAAGTTATATCAAATGTACCAAAATGC
TACTCCCTCCGTTT AAAAATGA  G CCT GTTT           GACT T                                                                                
|||||||||||||| ||||||||  | ||| ||||           |||| |                                                                                C
ATGAGGGAGGCAAA TTTTTGCT  C GGG TAAA           ACAA G                                                                                
              -        TA A   A    GGAAAAATCAA    A TTTTTCTTACAGGGAAAGGAAAAACCGTTGTGAAATAGAAATTGAAAGGTGCACCGTACAAATTCTGGTGTTCTAATATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3