SE3720094

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11162
  • Solanum lycopersicum
  • SE3720094
  • Mutator
  • M4
  • SL2.40ch09:44557355-44558012
  • TACTTTTAT
  • GGGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTTTTAT      ATTAA   ACA   AA     -TAC  T         AA                TT        ----TACTC    CTAAC  TATAAATTAATTAAATGGGTTGACTTCGAATTTGTATGATTAGTTATGTTTGTATGTGTATAATTCACATAATACACAAATACATATGTATAATATACAATTATTTAACCTATATACATATACAATTCACCTCTCTCACACTCTCTGCCCTCTTTGCTCGCCTCTCTCCTCCTCTCCCAATCTCGCTCACATCTCTCCTTCCTCTCTAAATCTCACTTTCCCTAAATACAAATGT
         GGGAAA     GCA   AGT  ACTTA    TA TTAATTACT  TCATAGTTATAGTTTG  ATAATTAT         GCGA     AT                                                                                                                                                                                                                                           
         ||||||     |||   |||  |||||    || |||||||||  ||||||||||||||||  ||||||||         ||||     ||                                                                                                                                                                                                                                           A
         CCCTTT     TGT   TCG  TGAAT    AT AATTAATGA  GGTATCGGTATCAAAC  TATTAATA         GATG     TA                                                                                                                                                                                                                                           
TATTTTCAT      GAAAG   ATA   -A     TTTT  T         GA                --        TTAAACATC    -----  CAATATATCTCCTCTCACCGTTCGCTATGACTCTCTCTTTACCCCCTTTTGCACCCTCTTTCCACTTAACCTATACATATAACCAATCTATTGACACATAATATGTATACATAAACAATATACTGTTCTCTCTGACCCTCTCCCTCCTCTCTCCACTCGCTCTAGCTCTCTCCCTATCTCTCCGCTCACTCTCTCTCTTCTCTCACCCTTTCTACACTTAATATGTAATATGTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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