SE3720097

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11165
  • Solanum lycopersicum
  • SE3720097
  • Mutator
  • M6
  • SL2.40ch01:81777519-81778159
  • TATTTTATT
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTTATTGA  AACTTTCATA      AAAT    AAATTATATTTTTATGTTATAGCTATACTTTGCATAATTGTGCACCATAGAAGACATAGATATGTATATTTCGCTATACATATATAAAAGAAAGCAATTGTATATAATGTTTCTATTTCGGTATACATATACAAAGATCAATTGTATAATTTTGTGTTTGTATAAAGAGAGATAGAAAAAGAGAAAAAAGAGAACTCGGCATGGGAATATTTGCATTGTAAAATTATAAGTGTGTGACGAAGATATATGTATTTGCATGTGTATATACAATTTTCTCTCACTTTATATAAAG
           GC          TATAGC    ACAA                                                                                                                                                                                                                                                                                                    
           ||          ||||||    ||||                                                                                                                                                                                                                                                                                                     
           TC          CTTTTT    AACA                                                                                                                                                                                                                                                                                                    
   TTATTTTA  ----------      ----    TATATTATTGTTTGATAGTTAAGTTTAATTTAGGTTATTTGTATTAAACTAAATTAACATGAGGTACTGTTCGACAATGATAAAGCGGAAAAAACCACTTAGAGTGAACAGTGAGAGCAAGAGAGGGAGCGGAGAGAGCGAAAATATGTTTACGTTTACATATTTTATACAACCACAAACATATTTCGCTCTTTTTTAGTATATATATATCAAGGGGAGAGGGTCTAGAGCAAGTGGTTAGACAGAGAGCGGAGAGAGCGAATATGTTGTATCTACATATTTAACACAAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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