SE3720101

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11169
  • Solanum lycopersicum
  • SE3720101
  • Mutator
  • M8
  • SL2.40ch09:2192757-2193144
  • TTTGAATAC
  • TTTGAATACGGAAAAATTACATGAAT

Secondary structure and sequence

TSD    TIR
5'



3'
         TAC     AA          -TAATACATTTT        ---AT    G  TT   C    --G         -     --CATTTATA     A  G    AAATCTGTAATATGTATTAAAAGTGAATTATAATTATTTTTGAAATATATTATGTTTGTTTGTTAAAAAATTGTCACATTGTATTATAAG
   TTTGAA   GGAAA  TTACATGAAT            TAAAAATA     TATT AT  TAG GATA   TTTTTGCTT ATTAC          GCAAT TT TGAT                                                                                          
   ||||||   |||||  ||||||||||            ||||||||     |||| ||  ||| ||||   ||||||||| |||||          ||||| || ||||                                                                                          T
   AAGTTT   CCTTT  AATGTATTTA            ATTTTTAT     ATAA TA  ATC TTAT   AAAAATGAA TAGTG          AAATA TT ATGT                                                                                          
TAT      --C     -A          TATAATATTATT        AAATT    A  TC   A    AAA         C     AAAATTAAGT     -  -    TCAAATTATGTATAATATTTCTATTTAAATAATAAGTTTATATTATGTTCAAGATTACTACTTATTATGTAAATAGTGTGTAAAATTATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End