SE3720103

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11171
  • Solanum lycopersicum
  • SE3720103
  • Mutator
  • M10
  • SL2.40ch08:51862174-51862833
  • TTCTTAAAG
  • TTAAAGCGGAAAAGGGTCAAAAATATCCTTGAACTATTCGAAATAGCTTAATATACCTTTAAACTATATTTCAGCTTAAATATACCTTTTCCCTCAAATTATAAGGTCTAAAATACCCTTCTCA

Secondary structure and sequence

TSD    TIR
5'



3'
TTC    -        A                         C       C    -    CC      C       CA           C   TT  C       A       T           C   TTAACA     T      C           C          A       A    A        C                          -GAA      C      -        CC               -  TT                     C      A              CG    AAA   ATGTATA   T   AT
   TTAA AGCGGAAA GGGTCAAAAATATCCTTGAACTATT GAAATAG TTAA TATA  TTTAAA TATATTT  GCTTAAATATA CTT  CC TCAAATT TAAGGTC AAAATACCCTT TCA      AGATC GTTAAA ATCACTTGGAT TCATGTGGGT TCACATG CATG CACATAAG CAATAGAGTTCCACTCATGCCATGTA    AATAAA TTATCC TAATTTCC  CAATTTTCTCTATTT CT  TAGAATTTAGAAACGGTTTCA TGAAGA CATAGAACCCCTTT  CTTA   CTT       TTG GAA  
   |||| |||||||| ||||||||||||||||||||||||| ||||||| |||| ||||  |||||| |||||||  ||||||||||| |||  || ||||||| ||||||| ||||||||||| |||      ||||| |||||| ||||||||||| |||||||||| ||||||| |||| |||||||| ||||||||||||||||||||||||||    |||||| |||||| ||||||||  ||||||||||||||| ||  ||||||||||||||||||||| |||||| ||||||||||||||  ||||   |||       ||| |||   
   AATT TTGCCTTT CCTAGTTTTTATGGGAATTTGATAG CTTTATC AATT ATAT  AAATTT ATATAAA  CGAATTTATAT GGA  GG AGTTTGA ATTCCAG TTTTATGGGAA AGT      TTTAG CAATTT TAGTGAATCTA GGTACATCTA AGTGTAC GTAC GTGTATTC GTTATCTCAAGGTGAGTACGGTGCAT    TTATTT AATGGG ATTAAAGG  GTTAAAAGAGGTAAA GG  ATCTTAAATCTTTGCTAAAGT ACTTTT GTATCTTGGGGAAA  GAGT   GAG       GAC CTT  
 AA    C        A                         T       A    T    AA      T       AC           A   TT  C       C       T           A   ------     C      A           C          C       C    G        A                          ATGA      A      G        -C               A  -C                     A      -              AG    AAA   -GTAAAG   T   GC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End