Plant MITE

SE3720109

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11177
Solanum lycopersicum
SE3720109
Mutator
M6
SL2.40ch01:73770841-73771494
TAATTTTAA
AGGGA

Secondary structure and sequence

TSD TIR

5'

3'

TAATTTTA     -------AA   -  A    CATAAAACATAAA  ------    TTTGTATACTATAGCAAAGTTTGCATAATTGCGCTAGCAAACATATATATGTATAATTCGCTATACATATACAATTGAAGCAAATTGTATAAAACGAAATATATAAAACGAGAAAAGAAACTTGGGCAGAGAATTGTATGAAACAAATTATATAATTATAAGTGTATAGGACGATTATATACATTTTGAATATGTATAAAAATGAGAAAGAGAGAAAGACAAAAGAGTCTTGGGCAGGGAATATACAATTAAATCGAATTGTATAAAATGAGAAAGAGAGAAA
        AGGGA         CTT TC CATA             AT      TATA                                                                                                                                                                                                                                                                                           
        |||||         ||| || ||||             ||      ||||                                                                                                                                                                                                                                                                                            
        TCCCT         CCT AC TGTT             TG      ATAT                                                                                                                                                                                                                                                                                           
AATTTTAA     ATTAAAATA   T  -    -------------  ATTATT    TTTATTATATCATCGATGGCAAACTAAATAAACACAAGGTACCGTTTGACAAACAGTCAGGGAGAGAAGGAGTATAAGAGCGAGTGGAGAGAACGAAATATGTTATCTTAACATATTTAATACAAAGATTAACATATTTCGCTCTCTTTTAACATATATGTGTACGTTTATGTATATAAAAACAGGATATGTGAACATTAATACGTTATTTTCTTGAGGGGATGGGTTCAGAGAAAACAGAAAGAGAGAAAGAGCAAAATATGTTTTAAATTTAACATATAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720109

TAATTTTAAGGGAAACTTTCACATACATAAAACATAAAATTATATTTGTATACTATAGCAAAGTTTGCATAATTGCGCTAGCAAACATATATATGTATAATTCGCTATACATATACAATTGAAGCAAATTGTATAAAACGAAATATATAAAACGAGAAAAGAAACTTGGGCAGAGAATTGTATGAAACAAATTATATAATTATAAGTGTATAGGACGATTATATACATTTTGAATATGTATAAAAATGAGAAAGAGAGAAAGACAAAAGAGTCTTGGGCAGGGAATATACAATTAAATCGAATTGTATAAAATGAGAAAGAGAGAAATGATATACAATTTAAATTTTGTATAAAACGAGAAAGAGAGAAAGACAAAAGAGACTTGGGTAGGGGAGTTCTTTTATTGCATAATTACAAGTGTATAGGACAAAAATATATGTATTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAATTAGAAACATAATTTATACAATTCTATTGTATAAAGCAAGAGAGGTGAGCGAGAATATGAGGAAGAGAGGGACTGACAAACAGTTTGCCATGGAACACAAATAAATCAAACGGTAGCTACTATATTATTTTATATTATTAGTTTGTCATTCCATAAAATTATCCCTAATTTTAA

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