SE3710110

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11178
  • Solanum lycopersicum
  • SE3710110
  • Tc1/Mariner
  • St3
  • SL2.40ch01:28189804-28190055
  • TA
  • TACTCCCTCCGTTTCAAAAAGAATGACC

Secondary structure and sequence

TSD    TIR
5'



3' 
              C      A      -------CTATTT    TT        - T    -----------     TGACCCCATTCCTTTTTTACCAACATTTTAATTTAACTATCAAGGTGGCATGTTTAAG
TACTCCCTCCGTTT AAAAAG ATGACC             CCTT  TAGTTTGT T TAAA           AAGAA                                                          
|||||||||||||| |||||| ||||||             ||||  |||||||| | ||||           |||||                                                           
ATGAGGGAGGCAAA TTTTTC TACTGG             TTGT  CAAATTCT T TCTT           ATTAG                                                          
              T      C      ATCAAACTGAACC    CT        T -    TCTTCCACAAA     AACACTAATATTTAATTTCAATACAGTTTACATGGTTTTATAGGAAATTAGAAGAGCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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