SE3720112

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11180
  • Solanum lycopersicum
  • SE3720112
  • Mutator
  • M8
  • SL2.40ch05:226335-226746
  • TTAGATATT
  • GATATTGGGAAACTTACATAAATATAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTA      ---      C          --A   TAAAATAAAAAAATAT   --      ATAGCAATAATATATTTTTTTCACTTGATCACTTTTAATTCATTTTTAATACAAGTTTAATACATATTACAAATAACAATTTATTATTCATATATAATACAAATTTTAATAATGGATAATACATTTATCGCACATTTTAATACACTTATAATA
   GATATT   GGGAAA TTACATAAAT   TAC                TTA  CCATTT                                                                                                                                                         
   ||||||   |||||| ||||||||||   |||                |||  ||||||                                                                                                                                                          
   TTATAG   CCTTTT AATGTATTTA   ATG                TTT  TAATGA                                                                                                                                                         
         ATT      T          ATC   --------TAAAATTA   AT      CTAAAATCGTTATGAAAAATAAATAATGGTAAATATTGTTACGGTACAGTTTAGATGTTATACTTAATTTTCACTTAATACATACGTTATATATACTTAATATTAACAAAAAACTTTATATAATACAAACAAACCATTTTTAAACTGTATAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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