SE3720113

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11181
  • Solanum lycopersicum
  • SE3720113
  • Mutator
  • M2
  • SL2.40ch02:47042247-47042570
  • TATTTTTTT
  • GGGATAATGCACAAGTACCCCTCCACCTATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTTTTT    T              C   C       CCTGAAATCCCGAAA                                      C T                 TAA       C    C  C            A      ----TCTCAT        CGC
         GGGA AATGCACAAGTACC CTC ACCTATG               TCCCGGAGACACATTTATACTATACTAAGGTCCTATTA C CCCTGAATTTATTTTAT   TAATTTT TACT TT TTCGGCTTACGT GCACTA          GGGGTCAA   
         |||| |||||||||||||| ||| |||||||               |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||   ||||||| |||| || |||||||||||| ||||||          ||||||||    
         CCCT TTACGTGTTCATGG GAG TGGATAC               AGGGTCTCTGTGTGAATATGATATGATTCCAGGATAAT G GGGACTTGAATAAAATA   ATTAAAG ATGG AA AAGCCGAATGCA TGTGAT          TTTCAGTT   
TTTTTTTAT    T              T   T       ---------------                                      A -                 TTC       A    C  A            C      CCAACTTTTT        AGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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