SE3720114

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11182
  • Solanum lycopersicum
  • SE3720114
  • Mutator
  • M4
  • SL2.40ch02:47370548-47371052
  • TAATTTTTT
  • TTTGGGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATTT         -----------C    AAATATAGCCATTTAAAAATAATTAATTATTCTTCATAGGTATAGTTTGATAATTACAATTTGTAGCTACATGTTATATGGAGGAAAGAGAGAGCGAGACTGAGAGAGAGGGGAAAAGAGTGTGAGAAAGATGAAATATATATGTATATTGGTTTGATAATTGTATATTATACATATGTATTCATATATATGGCAAGAGAAATTGAAAGTAGGAGAGAGGCGAGAGG
      TTTGGGAAA            TTTT                                                                                                                                                                                                                                   
      |||||||||            ||||                                                                                                                                                                                                                                    
      AAACTTTTT            TCGT                                                                                                                                                                                                                                   
TTTTTT         TAATGCGCCGAT    TTGAATATGATAAATTAATGAGTAGTATCAATATCAAACTATATTAATAGTGAGCGCTGATTGTAATATGTAATTAACACACCCAACTGAAGCTTAAACATATTAATCAGTACAAACATATATATATTAAGCGGTCCTTTATGTTTATGTATACATATCATATGTTAAAAAATTGGATATATGTATATGTTAAGTGGAGAGAGGGTGGGAGACAGGAGAGAGCGAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End
6 Today Pageviews

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3