Plant MITE

SE3710119

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11187
Solanum lycopersicum
SE3710119
Tc1/Mariner
St3
SL2.40ch09:65642912-65643165
TA
TACTCCCTCCGTTTC

Secondary structure and sequence

TSD TIR

5'

3'

               TTAA            CCTTTCCTTT    TT -  -      ---       ACCTCATTCTTTTTTGGTAACATTTTAATTTCAGTTTTCTACGTGGCATGTTTAAGGCCACAAGATCA
TACTCCCTCCGTTTC    AAAGAATGACCT          TTAA  T GT TTAAAA   AAGAATG                                                                    
|||||||||||||||    ||||||||||||          ||||  | || ||||||   |||||||                                                                    A
ATGAGGGAGGCAAAG    TTTTTTACTGGA          TCAG  A TG ACCGTG   CAAATTC                                                                    
               --TG            ----------    -- C  A      CCT       TTATTTTTCTTCTGAAAACTTAGAACACCAGAATCTAATTTCAATCTAGTTTACATGTTTTAACGGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710119

TACTCCCTCCGTTTCTTAAAAAGAATGACCTCCTTTCCTTTTTAATTTGTTTAAAAAAGAATGACCTCATTCTTTTTTGGTAACATTTTAATTTCAGTTTTCTACGTGGCATGTTTAAGGCCACAAGATCAAAGGGCAATTTTGTACATTTGATCTAACTTTAATCTAAGACCACAAGATTCAAAAGTCTTCTTTTTATTCTTAAACTCCGTGCCAAGTCAGACTAGGTCATTTTTTGTGAAACGGAGGGAGTA

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