SE3720120

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11188
  • Solanum lycopersicum
  • SE3720120
  • Mutator
  • M6
  • SL2.40ch01:67755628-67756291
  • ATAATTCAA
  • A

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAATTCA    --  -      --   TAATCCTAAATTAATAAAT     TAAA   -----  TAAC    C  TGATTTAATTGTGCCCTTTAGCAAATTGTTTGTCAGTTGCCTCTCTCCATCAAACTCTCACTCACTACTCTCGCTCTCTCGTTCGCTCCCTCTCACTTTATACAAACACAAATGTATAAAATGTGTTTGTGTTTGTATAAAGCGAGAAAAAATTATACATATACATATATTTTCGTTCTCCTCTCGCTACTCTCCCAGATCTCGCTCACCATCCTCGCGTCTATCACTTATACAATTAGAAACGAAATGTATAAATTGTGTTTCTGTTTATATAG
        AGGG  AA AATTGT  ATA                   CAAAT    TGC     TA    CACA TT                                                                                                                                                                                                                                                                                   
        ||||  || ||||||  |||                   |||||    |||     ||    |||| ||                                                                                                                                                                                                                                                                                   A
        AATA  CG AGAAAG  TAT                   ATCGT    TTG     TA    AGTA CA                                                                                                                                                                                                                                                                                   
   AACTT    CC  T      TG   -------------------     ----   TATTT  ----    -  AACATACAATATTGTGTAAAACGTATTAACGTGAAGCATCGTTTGTACTTATACGTATTAAATGATATGTATATGTTTCTTTAGTTAACATATTCAGCAATATGTATATCTTTTTTTTGTCAACATATGTTTAGTTAACATATTAAACACATACGTTTTTTGCTCTTTCTTTGTCTGTTTTCTTTTAATCCTTCCTTTTATAAACATATCATATTAATATTCACATATCCTGCTTCTATATACATAAACATCCACATTTATATTAAAAGAGAGCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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