Plant MITE

SE3720123

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11191
Solanum lycopersicum
SE3720123
Mutator
M7
SL2.40ch06:1826067-1826402
TTTAAAAAA
AAAGGAAAAATGACAGAAATTTCACAT

Secondary structure and sequence

TSD TIR

5'

3'

TTTAAA     AA   T       AT       --TTAAATTCTCTT         -AT   CCACT         ATCGT  -         ATTTTCAC   - C  A TGATGTATCATCACATCAAATTTATGTATCTCGCGCATCAGATTAGTGTATCATGTATAAAATGT
      AAAGG  AAA GACAGAA  TTCACAT              ATTACCATT   TCC     AGTTTATAA     CA AAATTCCTC        GCA T AG T                                                                 
      |||||  ||| |||||||  |||||||              |||||||||   |||     |||||||||     || |||||||||        ||| | || |                                                                 T
      TTTCC  TTT CTGTCTT  AAGTGTA              TAATGGTAG   AGG     TCAAATATT     GT TTTAAGGAG        TGG T AT G                                                                 
AAAAAA     CA   C       --       TGAAAATTCCATTT         ACT   AACAT         --AAT  C         ------AT   C -  - TTATTATATTCACTACTATGTAGTTAGACTACGTGCTCTATGTGATTAACAATTCATTATATGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720123

TTTAAAAAAGGAAAAATGACAGAAATTTCACATTTAAATTCTCTTATTACCATTATTCCCCACTAGTTTATAAATCGTCAAAATTCCTCATTTTCACGCATCAGATTGATGTATCATCACATCAAATTTATGTATCTCGCGCATCAGATTAGTGTATCATGTATAAAATGTTATGTATATTACTTAACAATTAGTGTATCTCGTGCATCAGATTGATGTATCATCACTTATATTATTGTATCGGTTAGAGGAATTTCTGTAATTATAAACTTACAAGGATCAGATGGTAATTTTACCTTAAAAGTATGTGAATTCTGTCCTTTACCCTTTAAAAAA

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