SE3720124

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11192
  • Solanum lycopersicum
  • SE3720124
  • Mutator
  • M9
  • SL2.40ch10:36966965-36967288
  • TTAAATATA
  • AGGCATGATACATAAATATGCC

Secondary structure and sequence

TSD    TIR
5'



3'
TTAAATAT                 A  -  GTTT     G         CAC      A     AAAT       T                              A     G   T         AA             A     CATA  A  --------  AC
        AGGCATGATACATAAAT TG CC    AACTT ACCTTATTT   ATTTAT TCTTC    TTTGAGT TGCACAAGTAGACACTTAAACTTGTATAAA TTGAA AAG AGACACATG  TTCTATGTGGCAT ATACA    GG CA        CC  
        ||||||||||||||||| || ||    ||||| |||||||||   |||||| |||||    ||||||| |||||||||||||||||||||||||||||| ||||| ||| |||||||||  ||||||||||||| |||||    || ||        ||  A
        TCCGTATTATGTATTTA AC GG    TTGAA TGGAGTAAA   TAAATA AGGAG    GAATTTA ACGTGTTCATCTGTGAGTTTGAACATGTTT AACTT TTT TCTGTGTGC  AGGATACATTGTA TATGT    CC GT        GG  
ATATAAAT                 A  A  -AAT     A         CTA      C     -GTT       T                              A     G   T         GC             G     ---A  -  TAAACACA  AA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End