Plant MITE

SE3750132

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11200
Solanum lycopersicum
SE3750132
PIF/harbinger
To1
SL2.40ch07:59666129-59666781
TTA
GGGCCCGTTTGGCCATAAATTTTCCAAATAATATTTGGGAAAAATTTG

Secondary structure and sequence

TSD TIR

5'

3'

TTA    --C            A      ------------      A        -A             TAATGTTTGTCCATACAATTTGCCATTATTTGATAAATATTTTTGCAAATTTTCAAATATTAGTTTTTTCTAGTATTTGGGCCAAATCTCATTATTTGGGATATTTTAAAAATTAAAATTTTACCCCAACCTTTTATCTTTTACAAAAACACTCTCTCTAGTAGTTGTTTGCGTTGTATTACATCATTTTTAACGTGAACACCAAAATAGTGATGAAATATGTAGTGAATATTAAATAATGATATGATTGTTGATGAAAATTAT
   GGGC   CGTTTGGCCATA ATTTTC            CAAATA TATTTGGG  AAAATTTGGCAAA                                                                                                                                                                                                                                                                        
   ||||   |||||||||||| ||||||            |||||| ||||||||  |||||||||||||                                                                                                                                                                                                                                                                         
   TTCG   GCAAACCGGTAT TAAAGG            GTTTAT ATAAACTC  TTTTAAACCCATT                                                                                                                                                                                                                                                                        
  A    ATC            C      TTTATAAGAACC      A        AC             TTAAAATGGTACACAAACCGGTATTTTAAACCCTTTATATAAAGTGGAAAAATCTTTTTATACTAAATATGTGTGTTCAAAATTTTTAATAGTTTTAATTGATTTTCAAACATAATGTTCAGTTACTTACAAGCAATATTGTTATTGTTTATTACAGGTACTGTGATTTCGTTACACTATTAAACCTCACTCACGTTGTTCTTAATAAAGTATGTAGCACTTCATCTGTTTCATGTACTGAAACAATGGATTTCGGTTAAAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3750132

TTAGGGCCCGTTTGGCCATAAATTTTCCAAATAATATTTGGGAAAAATTTGGCAAATAATGTTTGTCCATACAATTTGCCATTATTTGATAAATATTTTTGCAAATTTTCAAATATTAGTTTTTTCTAGTATTTGGGCCAAATCTCATTATTTGGGATATTTTAAAAATTAAAATTTTACCCCAACCTTTTATCTTTTACAAAAACACTCTCTCTAGTAGTTGTTTGCGTTGTATTACATCATTTTTAACGTGAACACCAAAATAGTGATGAAATATGTAGTGAATATTAAATAATGATATGATTGTTGATGAAAATTATTAAAAATTGGCTTTAGGTAACAAAGTCATGTACTTTGTCTACTTCACGATGTATGAAATAATTCTTGTTGCACTCACTCCAAATTATCACATTGCTTTAGTGTCATGGACATTATTTGTTATTGTTATAACGAACATTCATTGACTTGTAATACAAACTTTTAGTTAATTTTGATAATTTTTAAAACTTGTGTGTATAAATCATATTTTTCTAAAAAGGTGAAATATATTTCCCAAATTTTATGGCCAAACACATGGTAAAATTTTACCCAAATTTTCACTCAAATAATATTTGCCAAGAATATTTGGAAATCTATGGCCAAACGCTAGCTTA

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