Plant MITE

SE3720136

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11204
Solanum lycopersicum
SE3720136
Mutator
M9
SL2.40ch06:28861295-28861595
TTTGAATAA
AAGGCATAATACATA

Secondary structure and sequence

TSD TIR

5'

3'

TTTGAAT    C          -AATAT     TT       G  C    CA  T  A  C           G GTGTG           ACTTAA   TGTATAAAG     C                CTTACATGTCATTTGTGGTGTC
       AAGG ATAATACATA      GCCCT  AACTTGG TT AAAT  TA TT TG CCTTCAACTTT G     CATAAGTAGAC      ACT         TTGAA AAATAGACACACATGT                      
       |||| ||||||||||      |||||  ||||||| || ||||  || || || ||||||||||| |     |||||||||||      |||         ||||| ||||||||||||||||                      C
       TTCC TATTATGTAT      TGGGA  TTGAACC AA TTTA  AT GA AC GGAGGTTGAAA T     GTGTTTGTCTG      TGA         AATTT TTTATTTGTGTACTCA                      
AATAAGT    A          ATAACC     -T       G  A    AA  T  A  T           G ATTAA           --AAAG   TAGGTTGAA     A                GGATTTACTGTTTCATGTGCAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720136

TTTGAATAAGGCATAATACATAAATATGCCCTTTAACTTGGGTTCAAATCATATTTATGCCCTTCAACTTTGGGTGTGCATAAGTAGACACTTAAACTTGTATAAAGTTGAACAAATAGACACACATGTCTTACATGTCATTTGTGGTGTCCTACGTGTACTTTGTCATTTAGGACTCATGTGTTTATTTATTTAAAAGTTGGATAGTGAAAGTCTGTTTGTGAATTATGAAAGTTGGAGGTCAAAGTTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATACCTTTGAATAA

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