Plant MITE

SE3710140

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11208
Solanum lycopersicum
SE3710140
Tc1/Mariner
St1
SL2.40ch01:72769657-72769919
TA
TACTCCCTCCGTTCGTAATTATTTGTCAT

Secondary structure and sequence

TSD TIR

5'

3'

          G  C TA   A    T   -ATG    TTATTAAAAGTCAATTTGATTAATTTTTAAATGTAAATTGGATTACATTAATTCGATATTTTAAACAAAAAATTAGATATTCTAAAACTATATGA
TACTCCCTCC TT G  ATT TTTG CAT    ACAT                                                                                               
|||||||||| || |  ||| |||| |||    ||||                                                                                                
ATGAGGGAGG AG C  TAA AAAC GTA    AGAT                                                                                               
          G  A CA   A    C   CCAA    AAAAATCTCAGTTTGATATTTTTAAAACTGAATGTAAAATTCTACATAAAAAAAGTAGTATAATTATACATTTTATAACATTAAATATCATGAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710140

TACTCCCTCCGTTCGTAATTATTTGTCATATGACATTTATTAAAAGTCAATTTGATTAATTTTTAAATGTAAATTGGATTACATTAATTCGATATTTTAAACAAAAAATTAGATATTCTAAAACTATATGAAAAGTACTATAAATTACAATATTTTACATATTAATATGATGAAAAAAATACATCTTAAAATGTAAGTCAAAATTTTTATAGTTTGACTCTAAAAATAGAAACCATGCCAAAAAATACCAGAGGGAGGGAGTA

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